CEB - BKI

RM 465 Find Cheap Flights from Cebu City to Kota Kinabalu – Compare and Save

1 adult
1 adult, Economy, 0 bags

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Everything you should know

Cheapest return flight
RM 1,090
Typical prices: RM 639-RM 1,193
Multiple Airlines
Mon 3/12Thu 6/12
CEB - BKI • 1 stop
Cheapest one-way flight
RM 465
Typical prices: RM 402-RM 646
Philippines AirAsia
Thu 15/11
CEB - BKI • 1 stop
Direct flights
Not available
There are currently no direct flights between Cebu City and Kota Kinabalu. You'll need to take a connecting flight to reach the destination.
Insights
Insights
When to travel
August
Cheapest • 30% price drop
July
Most popular
Good to know
+1
Good to know
+1
Top stopover airports
Kuala Lumpur Intl (KUL)
Cheapest • Avg RM 784 (return)
Manila Ninoy Aquino Intl (MNL)
Shortest trip • 9h 58m (one-way)
Insights
Insights
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We hope you enjoy your trip to Kota Kinabalu!
Flight Deals
Booking Insights
Flight Deals

Cheap Flights from Cebu City to Kota Kinabalu (CEB-BKI)

 
Discover the best prices for you by selecting your travel dates on KAYAK.

Recent return flight deals from Cebu City to Kota Kinabalu

Thu, 3 Dec - Sun, 6 Dec
Multiple Airlines Logo
22:55 - 18:20CEB  Cebu City Mactan Intl-BKI Kota Kinabalu
19h 25m1 stop Manila Ninoy Aquino Intl
Multiple Airlines Logo
19:05 - 01:30BKI  Kota Kinabalu-CEB Cebu City Mactan Intl
6h 25m1 stop Manila Ninoy Aquino Intl
RM 1,090Multiple Airlines
Sun, 6 Dec - Sun, 13 Dec
Philippines AirAsia Logo
06:25 - 18:20CEB  Cebu City Mactan Intl-BKI Kota Kinabalu
11h 55m1 stop Manila Ninoy Aquino Intl
Philippines AirAsia Logo
19:05 - 05:55BKI  Kota Kinabalu-CEB Cebu City Mactan Intl
10h 50m1 stop Manila Ninoy Aquino Intl
RM 1,094Philippines AirAsia
Thu, 3 Dec - Sun, 6 Dec
Multiple Airlines Logo
22:55 - 18:20CEB  Cebu City Mactan Intl-BKI Kota Kinabalu
19h 25m1 stop Manila Ninoy Aquino Intl
Multiple Airlines Logo
19:05 - 00:50BKI  Kota Kinabalu-CEB Cebu City Mactan Intl
5h 45m1 stop Manila Ninoy Aquino Intl
RM 1,106Multiple Airlines
Mon, 21 Dec - Fri, 25 Dec
Philippines AirAsia Logo
10:35 - 18:20CEB  Cebu City Mactan Intl-BKI Kota Kinabalu
7h 45m1 stop Manila Ninoy Aquino Intl
Philippines AirAsia Logo
19:05 - 10:05BKI  Kota Kinabalu-CEB Cebu City Mactan Intl
15h 00m1 stop Manila Ninoy Aquino Intl
RM 1,229Philippines AirAsia
Mon, 21 Dec - Fri, 25 Dec
Philippines AirAsia Logo
10:35 - 18:20CEB  Cebu City Mactan Intl-BKI Kota Kinabalu
7h 45m1 stop Manila Ninoy Aquino Intl
Philippines AirAsia Logo
19:05 - 10:05BKI  Kota Kinabalu-CEB Cebu City Mactan Intl
15h 00m1 stop Manila Ninoy Aquino Intl
RM 1,233Philippines AirAsia
Mon, 21 Dec - Fri, 25 Dec
Philippines AirAsia Logo
10:35 - 18:20CEB  Cebu City Mactan Intl-BKI Kota Kinabalu
7h 45m1 stop Manila Ninoy Aquino Intl
Philippines AirAsia Logo
19:05 - 05:55BKI  Kota Kinabalu-CEB Cebu City Mactan Intl
10h 50m1 stop Manila Ninoy Aquino Intl
RM 1,274Philippines AirAsia
Mon, 21 Dec - Fri, 25 Dec
Philippines AirAsia Logo
10:35 - 18:20CEB  Cebu City Mactan Intl-BKI Kota Kinabalu
7h 45m1 stop Manila Ninoy Aquino Intl
Philippines AirAsia Logo
19:05 - 05:55BKI  Kota Kinabalu-CEB Cebu City Mactan Intl
10h 50m1 stop Manila Ninoy Aquino Intl
RM 1,286Philippines AirAsia
Thu, 3 Dec - Sun, 6 Dec
Multiple Airlines Logo
06:25 - 21:55CEB  Cebu City Mactan Intl-BKI Kota Kinabalu
15h 30m2 stops Manila Ninoy Aquino Intl Kuala Lumpur Intl
Multiple Airlines Logo
19:05 - 00:50BKI  Kota Kinabalu-CEB Cebu City Mactan Intl
5h 45m1 stop Manila Ninoy Aquino Intl
RM 1,490Multiple Airlines
Sun, 6 Dec - Sun, 13 Dec
Multiple Airlines Logo
11:00 - 18:20CEB  Cebu City Mactan Intl-BKI Kota Kinabalu
7h 20m2 stops Boracay Godofredo P. Ramos Manila Ninoy Aquino Intl
Multiple Airlines Logo
19:05 - 03:45BKI  Kota Kinabalu-CEB Cebu City Mactan Intl
8h 40m1 stop Manila Ninoy Aquino Intl
RM 1,555Multiple Airlines
Tue, 8 Dec - Tue, 15 Dec
Multiple Airlines Logo
23:25 - 18:20CEB  Cebu City Mactan Intl-BKI Kota Kinabalu
18h 55m1 stop Manila Ninoy Aquino Intl
Multiple Airlines Logo
07:20 - 18:35BKI  Kota Kinabalu-CEB Cebu City Mactan Intl
11h 15m1 stop Taipei City Taiwan Taoyuan Intl
RM 1,711Multiple Airlines
Booking Insights

Price, demand, and travel trends for Cebu City to Kota Kinabalu flights

Use KAYAK data on prices, travel dates, airlines, and seasonal trends to compare options and book flights with more confidence.

What's the cheapest day of the week to fly from Cebu City to Kota Kinabalu?

Based on deals KAYAK users found in the last 12 months, Thursday is the cheapest day of the week to fly from Cebu City to Kota Kinabalu. It's 31% cheaper than the average day, while Saturday is the most expensive, with prices 70% higher.

Find deals

Key details for Cebu City to Kota Kinabalu flights

Low season

November

Cheapest flight

RM 465
Beat the crowds with an average 68% drop in travellers.
The most popular month to fly with an average 40% increase in travellers.
One-way flight from Cebu City to Kota Kinabalu

When to book flights from Cebu City to Kota Kinabalu

Are your dates flexible? Find out the best times to travel from Cebu City to Kota Kinabalu based on our flight data from the last year. Discover the cheapest month and even day to fly.
Estimated return price

Your Cebu City to Kota Kinabalu flight questions, answered

Find helpful answers about this route, including flight times, airports, airlines, and booking tips.

  • How long is a flight from Cebu City to Kota Kinabalu?

    A direct flight from Cebu City to Kota Kinabalu takes 00m, covering 1,607 km.

  • Do I need a passport to fly from Cebu City to Kota Kinabalu?

    Yes, a valid passport is required for this international route. Many destinations require at least six months of validity beyond your travel dates. Check your passport expiry well before booking.

  • How much should I expect to pay for a Cebu City to Kota Kinabalu flight?

    Return flights from Cebu City to Kota Kinabalu range from RM 639 to RM 1,193, with an average of RM 910 over the past 12 months. Anything below RM 639 counts as a good deal.

  • Have flight prices from Cebu City to Kota Kinabalu changed much recently?

    Yes. Based on fares seen in the past 5 days, return flight prices on this route showed a wide range, from about RM 1,090 to RM 3,748. That means the highest observed fare was about 3x higher than the lowest one.

  • How are flight prices from Cebu City to Kota Kinabalu looking right now?

    One-way fares from Cebu City to Kota Kinabalu are currently higher than usual. Average one-way flight prices are about RM 1,015, which is 105% above the typical average for this route.

  • Which car hire options are available at Kota Kinabalu Airport (BKI)?

    Kota Kinabalu Airport (BKI) hosts 5 major car rental companies, with daily rates starting from around RM 70 for economy cars. Top options include:

    • keddy by Europcar
    • GREEN MOTION
    • Europcar
    • MKAZ
    • Suria Car Rental

  • Which airports can I use when flying from Cebu City to Kota Kinabalu?

    Flights from Cebu City to Kota Kinabalu usually depart from Cebu City Mactan Intl (CEB) and arrive at Kota Kinabalu (BKI).

  • Which airports do connecting flights from Cebu City to Kota Kinabalu pass through?

    One-stop flights from Cebu City to Kota Kinabalu most commonly connect through:

    • Kuala Lumpur Intl (KUL) – 45% of one-stop connections
    • Manila Ninoy Aquino Intl (MNL) – 45% of one-stop connections
    • Singapore Changi (SIN) – 9% of one-stop connections

  • Can I save money by using flexible dates for flights from Cebu City to Kota Kinabalu?

    Yes. Flexible dates can save you up to 59% on flights from Cebu City to Kota Kinabalu. Thursday is the cheapest departure day at RM 637 return on average, while Saturday is the most expensive at RM 1,551, a difference of RM 915.

    KAYAK's flexible dates feature shows options up to three days before and after your selected dates, making it easier to compare nearby fares.

  • How much time can I save by choosing a different stopover airport from Cebu City to Kota Kinabalu?

    Flying via Manila Ninoy Aquino Intl (MNL) gives the shortest average 1-stop total travel time of 9h 58m, compared to 10h 32m via Kuala Lumpur Intl (KUL) and 14h 16m via Singapore Changi (SIN).

Your guide to booking Cebu City to Kota Kinabalu flights

Get tips on when to book, when to fly, and what to know before your trip.
  • If your dates are flexible, aim for a Thursday departure and avoid flying on Saturday. On this route, Thursday flights average RM 637, which is about RM 915 less than Saturday fares (59% savings) based on the last 12 months.
  • If you can choose when to travel, plan your Cebu City to Kota Kinabalu trip for August. Fares historically average RM 641 return in that month – typically RM 1,176 less than the most expensive month, which is May (based on the last 12 months).
  • If you're arriving late at night and need somewhere to stay, check out these hotels close to Kota Kinabalu Airport.

    • Lintas Platinum Hotel
    • Goldenhill Hotel

More options for your flight from Cebu City to Kota Kinabalu

Complete your trip to Kota Kinabalu with a hotel stay or car hire

Car rentals in Kota Kinabalu
Hotels in Kota Kinabalu