Which airports can I use when flying from Cebu City to Kota Kinabalu?

Flights from Cebu City to Kota Kinabalu usually depart from Cebu City Mactan Intl (CEB) and arrive at Kota Kinabalu (BKI).

Which airports do connecting flights from Cebu City to Kota Kinabalu pass through?

One-stop flights from Cebu City to Kota Kinabalu most commonly connect through: • Manila Ninoy Aquino Intl (MNL) – 54% of one-stop connections • Kuala Lumpur Intl (KUL) – 40% of one-stop connections • Singapore Changi (SIN) – 6% of one-stop connections Manila Ninoy Aquino Intl (MNL) handles the largest share of one-stop connections on this route.

Can I save money by using flexible dates for flights from Cebu City to Kota Kinabalu?

Yes. Being flexible with your travel dates can save you up to 46% on the Cebu City to Kota Kinabalu route. Monday is the cheapest departure day at RM 654 return on average, while Thursday is the most expensive at RM 1,211, a difference of RM 557. KAYAK's flexible dates feature shows options up to 3 days before and after your selected dates, making it easier to compare nearby fares.

How long is a flight from Cebu City to Kota Kinabalu?

A direct flight from Cebu City to Kota Kinabalu takes 0h 00m, covering 1,607 km.

Do I need a passport to fly from Cebu City to Kota Kinabalu?

Yes, a valid passport is required for this international route. Many destinations require at least six months of validity beyond your travel dates. Check your passport expiry well before booking.

Have flight prices from Cebu City to Kota Kinabalu changed much recently?

Yes. Based on fares seen in the past 5 days, return flight prices on this route showed a wide range, from about RM 894 to RM 5,811. That means the highest observed fare was about 7x higher than the lowest one.

How are flight prices from Cebu City to Kota Kinabalu looking right now?

One-way fares from Cebu City to Kota Kinabalu are currently in line with typical prices for this route. Average one-way fares are about RM 482.

How much time can I save by choosing a different stopover airport from Cebu City to Kota Kinabalu?

Flying via Manila Ninoy Aquino Intl (MNL) gives the shortest average 1-stop total travel time of 9h 10m, compared to 11h 08m via Kuala Lumpur Intl (KUL) and 14h 16m via Singapore Changi (SIN).

Which car hire options are available at Kota Kinabalu Airport (BKI)?

Kota Kinabalu Airport (BKI) hosts 5 major car hire companies, with daily rates starting from around RM 63 for economy cars. Top options include: • keddy by Europcar • GREEN MOTION • Europcar • KK Rent A Car • Hertz

How much should I expect to pay for a Cebu City to Kota Kinabalu flight?

Return flights from Cebu City to Kota Kinabalu range from RM 670 to RM 1,041, with an average of RM 808 over the past 12 months. Anything below RM 670 counts as a good deal.

What is the cheapest airline to fly from Cebu City to Kota Kinabalu?

Philippines AirAsia (RM 894) and Scoot (RM 947) are the cheapest airlines to fly return from Cebu City to Kota Kinabalu according to KAYAK data over the last 5 days.

What is the most popular stopover airport when flying from Cebu City to Kota Kinabalu?

Manila Ninoy Aquino Intl (MNL) is the most popular stopover for the Cebu City to Kota Kinabalu route. 54% of KAYAK users who booked 1-stop return journeys over the past 3 months connected via MNL.

What is the cheapest stopover airport when flying from Cebu City to Kota Kinabalu?

Flights via Kuala Lumpur Intl (KUL) offer the most affordable fares, with an average return price of RM 799. Based on KAYAK data over the past 3 months.

When flying from Cebu City to Kota Kinabalu, which airport offers the shortest stopover?

Manila Ninoy Aquino Intl (MNL) had the shortest average connection time for Cebu City to Kota Kinabalu stopovers at 445 minutes over the past 3 months.

RM 435 CHEAP FLIGHTS from Cebu City to Kota Kinabalu (CEB - BKI)

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Cheapest return flight

RM 894

Typical prices: RM 670-RM 1,041

Philippines AirAsia

Fri 19/10Fri 26/10

CEB - BKI • 1 stop

Cheapest one-way flight

RM 435

Typical prices: RM 400-RM 643

Scoot

Fri 16/11

CEB - BKI • 1 stop

Direct flights

Not available

There are currently no direct flights between Cebu City and Kota Kinabalu. You'll need to take a connecting flight to reach the destination.

Insights

When to travel

August

Cheapest • 21% price drop

August

Most popular

Good to know

Top stopover airports

Kuala Lumpur Intl (KUL)

Cheapest • Avg RM 799 (return)

Manila Ninoy Aquino Intl (MNL)

Shortest trip • 9h 10m (one-way)

Insights

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We hope you enjoy your trip to Kota Kinabalu!

Flight Deals

Cheap Flights from Cebu City to Kota Kinabalu (CEB-BKI)

Discover the best prices for you by selecting your travel dates on KAYAK.

Return

One-way

Last minute

Recent return flight deals from Cebu City to Kota Kinabalu

Mon, 19 Oct - Mon, 26 Oct

17:00 - 01:20CEB Cebu City Mactan Intl-BKI Kota Kinabalu

8h 20m1 stop Manila Ninoy Aquino Intl

19:05 - 10:00BKI Kota Kinabalu-CEB Cebu City Mactan Intl

14h 55m1 stop Manila Ninoy Aquino Intl

RM 894Philippines AirAsia

Sun, 24 Jan - Sun, 31 Jan

06:25 - 18:20CEB Cebu City Mactan Intl-BKI Kota Kinabalu

11h 55m1 stop Manila Ninoy Aquino Intl

19:05 - 10:00BKI Kota Kinabalu-CEB Cebu City Mactan Intl

14h 55m1 stop Manila Ninoy Aquino Intl

RM 931Philippines AirAsia

Sun, 18 Oct - Fri, 23 Oct

02:00 - 19:30CEB Cebu City Mactan Intl-BKI Kota Kinabalu

17h 30m1 stop Singapore Changi

20:45 - 11:55BKI Kota Kinabalu-CEB Cebu City Mactan Intl

15h 10m1 stop Singapore Changi

RM 947Scoot

Fri, 23 Oct - Fri, 30 Oct

17:00 - 01:20CEB Cebu City Mactan Intl-BKI Kota Kinabalu

8h 20m1 stop Manila Ninoy Aquino Intl

19:05 - 05:55BKI Kota Kinabalu-CEB Cebu City Mactan Intl

10h 50m1 stop Manila Ninoy Aquino Intl

RM 951Philippines AirAsia

Fri, 25 Sep - Mon, 5 Oct

06:25 - 01:20CEB Cebu City Mactan Intl-BKI Kota Kinabalu

18h 55m1 stop Manila Ninoy Aquino Intl

01:45 - 07:20BKI Kota Kinabalu-CEB Cebu City Mactan Intl

5h 35m1 stop Manila Ninoy Aquino Intl

RM 955Philippines AirAsia

Mon, 1 Feb - Sun, 21 Feb

06:25 - 18:20CEB Cebu City Mactan Intl-BKI Kota Kinabalu

11h 55m1 stop Manila Ninoy Aquino Intl

19:05 - 05:55BKI Kota Kinabalu-CEB Cebu City Mactan Intl

10h 50m1 stop Manila Ninoy Aquino Intl

RM 959Philippines AirAsia

Thu, 24 Sep - Fri, 2 Oct

03:35 - 01:20CEB Cebu City Mactan Intl-BKI Kota Kinabalu

21h 45m1 stop Manila Ninoy Aquino Intl

01:45 - 19:45BKI Kota Kinabalu-CEB Cebu City Mactan Intl

18h 00m1 stop Manila Ninoy Aquino Intl

RM 967Multiple Airlines

Fri, 25 Sep - Mon, 28 Sep

18:15 - 01:20CEB Cebu City Mactan Intl-BKI Kota Kinabalu

7h 05m1 stop Manila Ninoy Aquino Intl

01:45 - 07:20BKI Kota Kinabalu-CEB Cebu City Mactan Intl

5h 35m1 stop Manila Ninoy Aquino Intl

RM 983Philippines AirAsia

Sun, 20 Sep - Wed, 7 Oct

02:10 - 01:20CEB Cebu City Mactan Intl-BKI Kota Kinabalu

23h 10m1 stop Manila Ninoy Aquino Intl

01:45 - 19:10BKI Kota Kinabalu-CEB Cebu City Mactan Intl

17h 25m1 stop Manila Ninoy Aquino Intl

RM 987Multiple Airlines

Mon, 21 Sep - Mon, 5 Oct

18:15 - 01:20CEB Cebu City Mactan Intl-BKI Kota Kinabalu

7h 05m1 stop Manila Ninoy Aquino Intl

01:45 - 07:20BKI Kota Kinabalu-CEB Cebu City Mactan Intl

5h 35m1 stop Manila Ninoy Aquino Intl

RM 1,044Philippines AirAsia

Booking Insights

Price, demand, and travel trends for Cebu City to Kota Kinabalu flights

Use KAYAK data on prices, travel dates, airlines, and seasonal trends to compare options and book flights from Cebu City to Kota Kinabalu with more confidence.

Prices

Airlines

Stopovers

How much is a return flight from Cebu City to Kota Kinabalu?

Return flights from Cebu City to Kota Kinabalu start at RM 894. Prices are typical for this route right now, with typical return fares ranging from RM 670 to RM 1,041. The lowest price found in the past 5 days was RM 894 on Philippines AirAsia.

What's the cheapest day of the week to fly from Cebu City to Kota Kinabalu?

Monday is the cheapest day of the week to fly from Cebu City to Kota Kinabalu and is 20% cheaper than the average day. Thursday is the most expensive day with flight prices 49% higher than average. Based on deals found by KAYAK users in the last 12 months.

Find deals

Low season	January
High season	August
Cheapest flight	RM 435

Best time to beat the crowds (12% less expensive on average)

Most popular time to fly and prices are also 21% lower on average.

Flights from Cebu City to Kota Kinabalu

When to book flights from Cebu City to Kota Kinabalu

Are your dates flexible? Find out the best times to travel from Cebu City to Kota Kinabalu based on our flight data from the last year. Discover the cheapest month and even day to fly.

Estimated return price

KAYAK looks at all historical flight data for each date to provide a predicted price for one-way trips or returns with a duration up to 40 days. While we try to provide actual minimum prices for each date, some prices are predictions and actual prices may differ.

Which airports can I use when flying from Cebu City to Kota Kinabalu?
Flights from Cebu City to Kota Kinabalu usually depart from Cebu City Mactan Intl (CEB) and arrive at Kota Kinabalu (BKI).
Which airports do connecting flights from Cebu City to Kota Kinabalu pass through?
One-stop flights from Cebu City to Kota Kinabalu most commonly connect through:

• Manila Ninoy Aquino Intl (MNL) – 54% of one-stop connections
• Kuala Lumpur Intl (KUL) – 40% of one-stop connections
• Singapore Changi (SIN) – 6% of one-stop connections

Manila Ninoy Aquino Intl (MNL) handles the largest share of one-stop connections on this route.
Can I save money by using flexible dates for flights from Cebu City to Kota Kinabalu?
Yes. Being flexible with your travel dates can save you up to 46% on the Cebu City to Kota Kinabalu route. Monday is the cheapest departure day at RM 654 return on average, while Thursday is the most expensive at RM 1,211, a difference of RM 557. KAYAK's flexible dates feature shows options up to 3 days before and after your selected dates, making it easier to compare nearby fares.
How long is a flight from Cebu City to Kota Kinabalu?
A direct flight from Cebu City to Kota Kinabalu takes 0h 00m, covering 1,607 km.
Do I need a passport to fly from Cebu City to Kota Kinabalu?
Yes, a valid passport is required for this international route. Many destinations require at least six months of validity beyond your travel dates. Check your passport expiry well before booking.
Have flight prices from Cebu City to Kota Kinabalu changed much recently?
Yes. Based on fares seen in the past 5 days, return flight prices on this route showed a wide range, from about RM 894 to RM 5,811. That means the highest observed fare was about 7x higher than the lowest one.
How are flight prices from Cebu City to Kota Kinabalu looking right now?
One-way fares from Cebu City to Kota Kinabalu are currently in line with typical prices for this route. Average one-way fares are about RM 482.
How much time can I save by choosing a different stopover airport from Cebu City to Kota Kinabalu?
Flying via Manila Ninoy Aquino Intl (MNL) gives the shortest average 1-stop total travel time of 9h 10m, compared to 11h 08m via Kuala Lumpur Intl (KUL) and 14h 16m via Singapore Changi (SIN).
Which car hire options are available at Kota Kinabalu Airport (BKI)?
Kota Kinabalu Airport (BKI) hosts 5 major car hire companies, with daily rates starting from around RM 63 for economy cars. Top options include:
• keddy by Europcar
• GREEN MOTION
• Europcar
• KK Rent A Car
• Hertz
How much should I expect to pay for a Cebu City to Kota Kinabalu flight?
Return flights from Cebu City to Kota Kinabalu range from RM 670 to RM 1,041, with an average of RM 808 over the past 12 months. Anything below RM 670 counts as a good deal.

If your dates are flexible, aim for a Monday departure instead of Thursday. On this route, Monday flights average RM 654 – about RM 557 less than Thursday (46% savings) based on the last 12 months.
If you can choose when to travel, plan your Cebu City to Kota Kinabalu trip for August. Fares historically average RM 638 return in that month – typically RM 1,170 less than the most expensive month, which is May (based on the last 12 months).
If you're arriving late at night and need somewhere to stay, check out these hotels close to Kota Kinabalu Airport.
- Lintas Platinum Hotel
- Goldenhill Hotel
- Megah D'Aru Hotel

More options for your flight from Cebu City to Kota Kinabalu

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CEB - BKI

RM 435 Find Cheap Flights from Cebu City to Kota Kinabalu – Compare and Save

Everything you should know

Cheap Flights from Cebu City to Kota Kinabalu (CEB-BKI)

Recent return flight deals from Cebu City to Kota Kinabalu

Recent one-way flight deals from Cebu City to Kota Kinabalu

Recent last minute flight deals from Cebu City to Kota Kinabalu

Price, demand, and travel trends for Cebu City to Kota Kinabalu flights

How much is a return flight from Cebu City to Kota Kinabalu?

What's the cheapest day of the week to fly from Cebu City to Kota Kinabalu?

What is the cheapest airline to fly from Cebu City to Kota Kinabalu?

What is the most popular stopover airport when flying from Cebu City to Kota Kinabalu?

What is the cheapest stopover airport when flying from Cebu City to Kota Kinabalu?

When flying from Cebu City to Kota Kinabalu, which airport offers the shortest stopover?

Key details for Cebu City to Kota Kinabalu flights

Low season

High season

Cheapest flight

When to book flights from Cebu City to Kota Kinabalu

Your Cebu City to Kota Kinabalu flight questions, answered

Your guide to booking Cebu City to Kota Kinabalu flights

More options for your flight from Cebu City to Kota Kinabalu

Complete your trip to Kota Kinabalu with a hotel stay or car hire

Information on your arrival and departure airports

Cabin class types available on flights from Cebu City to Kota Kinabalu

Flights from domestic origins to Kota Kinabalu

Flights to other popular destinations

Find deals for your return flight