Hotels in Mission Bay, San Diego

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Best hotels in Mission Bay (San Diego)

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6+ Okay7+ Good8+ Great9+ Excellent

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RM 0 - RM 1,918RM 1,918 - RM 3,832RM 3,832 - RM 5,746RM 5,746 - RM 7,660RM 7,660+ per night

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Most recommended Mission Bay hotels

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Paradise Point Resort & Spa - San Diego - Bedroom
Paradise Point Resort & Spa
Mission Bay
8.1Very Good(1873)
Free Wi-Fi
Pool
Pet-friendly
Spa
RM 1,615+
Check availability
Catamaran Resort Hotel and Spa - San Diego - Restaurant
Catamaran Resort Hotel and Spa
Mission Bay
8.3Very Good(647)
Free Wi-Fi
Pool
Pet-friendly
Spa
RM 1,547+
Check availability
Bahia Resort Hotel - San Diego - Restaurant
Bahia Resort Hotel
Mission Bay
8.2Very Good(1510)
Parking
Free Wi-Fi
Pool
Pet-friendly
RM 1,382+
Check availability
The Dana on Mission Bay - San Diego - Building
The Dana on Mission Bay
Mission Bay
8.3Very Good(1677)
Pool
Pet-friendly
RM 1,078+
Check availability
Hyatt Regency Mission Bay Spa And Marina - San Diego - Balcony
Hyatt Regency Mission Bay Spa And Marina
Mission Bay
7.7Good(2609)
Free Wi-Fi
Pool
Pet-friendly
Spa
RM 1,418+
Check availability
The Wayfarer San Diego - San Diego - Bedroom
The Wayfarer San Diego
Mission Bay
8.7Very Good(1683)
Free Wi-Fi
Pool
RM 1,652+
Check availability
Beach House Steps To Sand Huge Patio Free Parking - San Diego - Kitchen
Beach House Steps To Sand Huge Patio Free Parking
Mission Bay
Free Wi-Fi
RM 1,458+
Check availability
2 Level Townhouse + Sky Deck + Steps to Ocean - San Diego - Outdoor view
2 Level Townhouse + Sky Deck + Steps to Ocean
Mission Bay
9.3Wonderful(29)
Free Wi-Fi
RM 2,506+
Check availability
Newer Unit! -- Ocean Front with Amazing Ocean Views! - San Diego - Kitchen
Newer Unit! -- Ocean Front with Amazing Ocean Views!
Mission Bay
Free Wi-Fi
RM 1,556+
Check availability
The Boardwalk Hotel - San Diego - Balcony
The Boardwalk Hotel
Mission Bay
8.6Very Good(42)
Free Wi-Fi
RM 1,564+
Check availability
3bed 2bath beach cottage Steps to the Sand in MB - San Diego - Bedroom
3bed 2bath beach cottage Steps to the Sand in MB
Mission Bay
9.8Wonderful(4)
Parking
Free Wi-Fi
Pet-friendly
RM 2,830+
Check availability
B5089 Seascape Beach House - San Diego - Outdoor view
B5089 Seascape Beach House
Mission Bay
9.7Wonderful(43)
Parking
Free Wi-Fi
RM 3,369+
Check availability
Steps To The Bay And The Ocean!! - San Diego - Living room
Steps To The Bay And The Ocean!!
Mission Bay
Free Wi-Fi
RM 957+
Check availability
Reduced Rates- Book Now!! Belmont Beach House - Mission Beach - San Diego - Balcony
Reduced Rates- Book Now!! Belmont Beach House - Mission Beach
Mission Bay
Pet-friendly
RM 2,823+
Check availability
Modern Beach Studio Condo - San Diego - Beach
Modern Beach Studio Condo
Mission Bay
Free Wi-Fi
RM 1,357+
Check availability
Beautiful beach bungalow with ocean views, fast WiFi, gas grill, and sunroom - San Diego - Living room
Beautiful beach bungalow with ocean views, fast WiFi, gas grill, and sunroom
Mission Bay
RM 1,504+
Check availability
Ocean Front Patio, Seconds to Beach/Ocean, Parking - San Diego - Patio
Ocean Front Patio, Seconds to Beach/Ocean, Parking
Mission Bay
RM 2,304+
Check availability
Manhattan Shores 1C - San Diego - Living room
Manhattan Shores 1C
Mission Bay
7.9Good(1)
Parking
Free Wi-Fi
Pet-friendly
RM 1,631+
Check availability
Oceanfront Beauty w/ Expansive Views & Private Hot Tub - San Diego
Oceanfront Beauty w/ Expansive Views & Private Hot Tub
Mission Bay
Spa
RM 7,658+
Check availability
Bright Dog-Friendly Condo W/ Access To Everything Mission Beach Has To Offer! - San Diego
Bright Dog-Friendly Condo W/ Access To Everything Mission Beach Has To Offer!
Mission Bay
RM 1,089+
Check availability
Booking Insights

KAYAK’s insights for hotels in Mission Bay

Discover seasonal trends, ideal booking windows, and other data-driven tips to plan your stay in Mission Bay with confidence.

Which month has the cheapest hotel rates in Mission Bay?

Hotels are cheapest in Mission Bay in December, with average rates of RM 3,700. In comparison, May is the most expensive month, with prices at RM 7,103.

What is the cheapest day of the week to book a hotel in Mission Bay?

Sunday offers the lowest rates in Mission Bay, with an average nightly price of RM 5,788. The highest prices are found on Friday, with average rates at RM 7,702.

How much is a hotel in Mission Bay for tonight?

The best deal for a 3-star hotel room in Mission Bay found by KAYAK users in the last 3 days was RM 744, while a 4-star hotel the lowest price was RM 1,598. The cheapest room found overall was for RM 169.

How much is a hotel in Mission Bay for this weekend?

The cheapest hotel room in Mission Bay for the upcoming weekend found on KAYAK in the last 3 days was for RM 1,248 per night. For the same dates, 3-star hotel rooms have been found for as low as RM 1,248 per night and 4-star hotel rooms from RM 1,477 per night.
Find deals

How much is a Mission Bay hotel?

Here are our most popular & best value hotels

Good to know

Low season

High season

Average price (weeknight)

December
May
RM 1,501
Cheapest month to stay with an average 43% drop in price.
Most expensive month to stay with an average 10% rise in price.
Average Sun - Thu price over the last 2 weeks.

Top tips for finding a hotel deal in Mission Bay

  • If you’re looking for a cheap hotel in Mission Bay, you should consider going during the low season. You’ll generally find lower-priced hotels in Mission Bay in June and April.
  • Not sure just how much there is to see and do in Mission Bay? KAYAK users usually book their hotel here for 2 days.

FAQs when booking a hotel in Mission Bay

  • What are the best hotels in Mission Bay?

    Mission Bay is a great part of San Diego to make your base. If you’re staying in Mission Bay area then Paradise Point Resort & Spa, Hyatt Regency Mission Bay Spa And Marina, and Bahia Resort Hotel are all recommended on KAYAK.

  • Which hotels in Mission Bay are romantic?

    If you’re looking for a romantic break with your partner in Mission Bay, then why not stay at The Dana on Mission Bay, Paradise Point Resort & Spa, or Bahia Resort Hotel, which have been recommended by KAYAK users as great for couples.

Where to stay in Mission Bay?

Our map will help you find the perfect hotel in Mission Bay, San Diego by showing you the exact location of each hotel.

What Mission Bay hotel guests are talking about

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Popular topics

Hotels about topic

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Bahia Resort Hotel - San Diego - Restaurant
Bahia Resort Hotel
Mission Bay
8.2Very Good(1510)
Parking
Free Wi-Fi
Pool
Pet-friendly
RM 1,382+
Check availability
The Dana on Mission Bay - San Diego - Building
The Dana on Mission Bay
Mission Bay
8.3Very Good(1677)
Pool
Pet-friendly
RM 1,078+
Check availability
The Wayfarer San Diego - San Diego - Bedroom
The Wayfarer San Diego
Mission Bay
8.7Very Good(1683)
Free Wi-Fi
Pool
RM 1,652+
Check availability
Hyatt Regency Mission Bay Spa And Marina - San Diego - Balcony
Hyatt Regency Mission Bay Spa And Marina
Mission Bay
7.7Good(2609)
Free Wi-Fi
Pool
Pet-friendly
Spa
RM 1,418+
Check availability
Catamaran Resort Hotel and Spa - San Diego - Restaurant
Catamaran Resort Hotel and Spa
Mission Bay
8.3Very Good(647)
Free Wi-Fi
Pool
Pet-friendly
Spa
RM 1,547+
Check availability

Everything you need to know for your stay in San Diego

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